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Joint Publications

  1. Jaroentomeechai T, Stark JC, Natarajan A, Glasscock C, Yates L, Hsu KJ, Mrksich M, Jewett MC, DeLisa MP (2018) “Single-pot glycoprotein biosynthesis using a cell-free transcription-translation system enriched with glycosylation machinery” Nature Communications 9: 2686
  2. Kightlinger W, Lin L, Rosztoczy M, DeLisa MP, Mrksich M, Jewett MC (2018) “Design of glycosylation sites by rapid synthesis and analysis of glycosyltransferase” Nature Chemical Biology 14: 627-635
  3. Younger AKD, Su PY, Shepard AJ, Udani SV, Cybulski TR, Tyo KE, Leonard JN (2018) “Development of novel metabolite-responsive transcription factors via transposon-mediated protein fusion” Protein Engineering, Design, and Selection 31(2): 55-63
  4. Hartfield RM, Schwarz KA, Muldoon JJ, Bagheri N, Leonard JN (2017) “Multiplexing engineered receptors for multiparametric evaluation of environmental ligands” ACS Synthetic Biology 6: 2042-2055
  5. Xu A, Szymczak L, Mrksich M, Bagheri N (2017) “Machine learning on SAMDI Mass spectrometry signal to noise ratio improves peptide array designs” Analytical Chemistry 89: 9039-9047
  6. Kelleher NL, Jewett MC, Mrksich M, et al (2018) “How many human proteoforms are there?” Nature Chemical Biology 14: 206-214
  7. Glasscock CJ, Lazar JT, Biggs BW, Arnold JH, Kang MK, Tullman-Ercek D, Tyo K, Lucks JB (2019) “Dynamic control of pathway expression with riboregulated switchable feedback promoters” bioRxiv 529180; doi: 10.1101/529180
  8. Meyer AJ, Saaem I, Silverman AD, Varaljay V, Mickol R, Blum SM, Tobias AV, Schwalm ND, Mojadedi W, Onderko E, Bristol C, Liu S, Casini A, Eluere R, Moser F, Drake C, Gupta M, Kelley-Lougnane N, Lucks JB, Akingbade KL, Lux MW, Glaven SM, Crookes-Goodson WJ, Jewett MC, Gordon B, Voigt CA (2019) “Organism engineering for the bioproduction of the triaminotrinitrobenzene (TATB) precursor phloroglucinola (PG)” ACS Synthetic Biology doi:10.1021/acssynbio.9b00393
  9. Yesselman JD, Eiler D, Carlson ED, Gotrik MR, d’Aquino AE, Ooms AN, Kladawang W, Carlson PD, Shi X, Constantino DA, Hershlag D, Lucks JB, Jewett MC, Kieft JS, Das R (2019) “Computational design of three-dimensional RNA structure and function” Nature Nanotechnology doi:10.1038/s41565-019-0517-8
  10. Xue AY, Yu AM, Lucks JB, Bagheri N (2019). “DUETT quantitatively identifies novel events in nascent RNA structural dynamics from chemical probing data” Bioinformatics doi:10.1093/bioinformatics/btz449
  11. Silverman AD, Kelley-Loughnane N, Lucks JB, Jewett MC (2019) “Deconstructing cell-free extract preparation for in vitro application of transcriptional genetic circuitry” ACS Synthetic Biology 8: 403-414; doi: 10.1021/acssynbio.8b00430.
  12. Thavarajah W, Silverman AD, Verosloff M, Kelley-Loughnane N, Jewett MC, Lucks JB (2019) “Point-of-use detection of environmental fluoride via a cell-free riboswitch-based biosensor” bioRxiv: 10.1101/712844 (In Revision ACS Synthetic Biology)
  13. Liu X, Silverman AD, Alam KK, Iverson E, Lucks JB, Jewett MC, Raman S (2019) “Design of a transcriptional biosensor for the portable, on-demand detection of cyanic acid” bioRxiv: 10.1101/736355 (In Revision ACS Synthetic Biology)
  14. Silverman AD, Akova U, Alam KK, Jewett MC, Lucks JB (2019) “Design and optimization of a cell-free atrazine biosensor” bioRxiv: 10.1101/779827 (In Revision ACS Synthetic Biology)
  15. Kightlinger W, Duncker K, Ramesh A, Thames A, Natarajan A, Stark JC, Yang A, Lin L, Mrksich M, DeLisa MP, Jewett MC (2019) “A cell-free biosynthesis platform for modular construction of protein glycosylation pathways” Nature Communications 10: 5404
  16. O’Kane PT, Dudley QM, McMillan AK, Jewett MC, Mrksich M (2019) “High-throughput mapping of CoA metabolites by SAMDI-MS to optimize the cell-free biosynthesis of HMG-CoA” Science Advances 5(6): EAAW9180
  17. Donahue PS, Draut JW, Muldoon JJ, Edelstein HI, Bagheri N, Leonard JN (2019) “COMET: A toolkit for composing customizable genetic programs in mammalian cells” bioRxiv: 769794; doi: 10.1101/769794
  18. Muldoon JJ, Chuang Y, Baheri N, Leonard JN (2019) “Macrophages employ quorum licensing to regulate collective activation” bioRxiv 610592; doi: 10.1101/610592
  19. Stainbrook SC, Yu JS, Reddick MP, Bagheri N, Tyo KEJ (2017) “Modulating and evaluating receptor promiscuity through directed evolution and modeling” Protein Engineering, Design and Selection 30(6): 455-465; doi: 10.1093/protein/gzx018
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